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Hideto Shimahara Assistant Professor
Center for Nano Materials and Technology

Results 1-20 of about 27

  • 1. Approach to Structure-Based Drug Discovery on Molecular Biology.,Shimahara H,Mol Biol,4,1,e121,2014.11.24
  • 2. Theoretical Study of a π-stacking Interaction in Carbonic Anhydrase.,Muhamad Koyimatu, Hideto Shimahara, and Hidemi Nagao,Technical memorandum (School of Information Science, Japan Advanced Institute of Science and Technology), 2013,pp. 31-32,2013/07/24
  • 3. Theoretical Study of p-stacking Interaction in Carbonic Anhydrase,M. Koyimatu, H. Shimahara, K. Kawaguchi, H. Saito, and H. Nagao,International Symposium on Computational Science,4 pages, 2013
  • 4. An Approach to Water Molecule Dynamics Associated with Motion of Catalytic Moiety,Hideto Shimahara, Kimikazu Sugimori, Muhmad Koyimatu, Hidemi Nagao, Tadayasu Ohkubo, and Yuji Kobayashi,AIP Conf. Proc. http://dx.doi.org/10.1063/1.4794643 http://scitation.aip.org/content/aip/proceeding/aipcp/10.1063/1.4794643,1518,610-613,2013
  • 5. Theoretical Model for Assessing Properties of Local Structures in Metalloprotein,M. Koyimatu, H. Shimahara*, M. Iwayama, K. Sugimori, K. Kawaguchi, H. Saito, and H. Nagao* (*co-correspondence),AIP Conf. Proc.,1518,626-629,2013
  • 6. Π-stacking Interaction between Heterocyclic Rings in a Reaction Field of Biological System,Muhamad KOYIMATU, Hideto SHIMAHARA, Kimikazu SUGIMORI, Kazutomo KAWAGUCHI, Hiroaki SAITO, and Hidemi NAGAO,The 12th Asia Pacific Physics Conference of the Association of Asia Pacific Physical Societies,accepted,4 pages,2013
  • 7. Nucleosome Structural Changes Induced by Binding of Non-histone Chromosomal Proteins HMGN1 and HMGN2,Hideto Shimahara*, Takaaki Hirano, Kouichi Ohya, Shun Matsuta, Sailaja S. Seeram, and Shin-ichi Tate,FEBS Open Bio, http://dx.doi.org/10.1016/j.fob.2013.03.002 (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3668530),3,184-191,2013
  • 8. 炭酸脱水酵素の反応機構を利用した二酸化炭素水和触媒の開発,島原秀登,JAIST-VBL教育・研究活動報告書2011-北陸先端科学技術大学院大学
  • 9. Theoretical Calculation for Proton Transfer in Biological System−Clarification of Catalytic Mechanism of Enzyme−,Hideto Shimahara,北陸先端科学技術大学院大学 共有計算サーバ使用成果報告 2011,45-46
  • 10. Assembly states of the nucleosome assembly protein 1 (NAP-1) revealed by sedimentation velocity and non-denaturing mass spectrometry,Masanori Noda, Susumu Uchiyama, Adam R. McKay, Akihiro Morimoto, Shigeki Misawa, Akihiro Yoshida, Hideto Shimahara, Hiroto Takinowaki, Shota Nakamura, Yuji Kobayashi, Sachihiro Matsunaga, Tadayasu Ohkubo, Carol V Robinson, Kiichi Fukui,Biochemical Journal,436,1,101-12,2011/05/15
  • 11. 量子化学的手法を用いた炭酸脱水酵素の触媒反応におけるプロトントランスファのメカニズムの解析,島原秀登,杉森公一,吉田卓也,長尾秀実,中沢隆,大久保忠恭,小林祐次,Japanese Journal of the Carbobnic Anhydrase Research,1,6,65,2010
  • 12. Tautomerism of histidine 64 associated with proton transfer in catalysis of Carbonic Anhydrase,Hideto Shimahara, Takuya Yoshida, Kimiichi Sugimori, Ayumu Sugiyama, Taku Mizukami, Hidemi Nagao, Takashi Nakazawa, Tadayasu Ohkubo, Yuji Kobayashi,FASEB J.,22,611.23,2008
  • 13. Tautomerism of histidine 64 associated with proton-transfer in catalysis of carbonic anhydrase.,Shimahara H, Yoshida T, Shibata Y, Shimizu M, Kyogoku Y, Sakiyama F, Nakazawa T, Tate SI, Ohki SY, Kato T, Moriyama H, Kishida KI, Tano Y, Ohkubo T, Kobayashi Y.,J. Biol. Chem.,282,13,9646-56,2007
  • 14. Theoretical Study of Free Energy in Docking Stability of Azurin(II)-Cytochrome c551(II) Complex System,Yamamoto T, Nishikawa K, Sugiyama A, Purqon A, Mizukami T, Shimahara H, *Nagao H, Nishikawa K,AIP Conference Proceedings,982,2008,784-787
  • 15. Free Energy Calculation of Docking Structure of Azurin(I)-Cyto- chrome c551(III) Complex Systems by using the Energetic Representation,Nishikawa K, Yamamoto T, Sugiyama A, Purqon A, Mizukami T, Shimahara H, *Nagao H, Nishikawa K,AIP Conference Proceedings,982,2008,780-783
  • 16. Distinct DNA methylation activity of Dnmt3a and Dnmt3b towords naked and nucleosomal DNA,Hideyuki Takeshima, Isao Suetake, Hideto Shimahara, Kiyoe Ura, Shin-ichi Tate, and Shoji Tajima,J Biochem.,139,3,503-15,2006
  • 17. Al(3+) interaction sites of calmodulin and the Al(3+) effect on target binding of calmodulin.,Kurita H, Nakatomi A, Shimahara H, Yazawa M, Ohki SY.,Biochem Biophys Res Commun.,333,1060-5,2005
  • 18. Assembly and Disassembly of Nucleosome Core Particles Containing Histone Variants by Human Nucleosome Assembly Protein I,Mitsuru Okuwaki, Kohsuke Kato, Hideto Shimahara, Shin-ichi Tate, and Kyosuke Nagata,Mol Cel Biol.,25,10639-10651,2005
  • 19. Molecular-orientation analysis based on alignment-induced TROSY chemical shift changes.,Tate S, Shimahara H, Utsunomiya-Tate N.,J Magn Reson.,171,284-92.,2004
  • 20. Measurement of 15N chemical shift anisotropy in a protein dissolved in a dilute liquid crystalline medium with the application of magic angle sample spinning.,Kurita J, Shimahara H, Utsunomiya-Tate N, Tate S.,J Magn Reson.,163,163-73,2003

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