List of TRMs found by our method very similar to gene modules found by GRAM
Close sup-TRM: Gene Module in GRAM 1. HAP2_HAP3_HAP5 (Module 10) ---> Cluster 87 2. SOK2_PHD1_NRG1 (Module 19) ---> Cluster 105 3. SOK2_YAP6_NRG1 (Module 21) ---> Cluster 105 4. ARG81_GCN4 (Module 26) ---> Cluster 86 5. HAP2_HAP4 (Module 27) ---> Cluster 56 6. GCR1 (Module 29) ---> Cluster 14 7. HIR1_HIR2 (Module 30) ---> Cluster 59 8. MET4_CBF1 (Module 42) ---> Cluster 55 9. SFP1_RAP1_FHL1 (Module 44) ---> Cluster 94 10. ROX1_PHD1_YAP6_NRG1 (Module 57) ---> Cluster 104 11. GAT3_FHL1_YAP5 (Module 93) ---> Cluster 92 12. PDR1_FHL1_YAP5 (Module 97) ---> Cluster 97 13. PDR1_FHL1_RAP1 (Module 98) ---> Cluster 93 14. ACE2_SKN7_SWI5 (Module 115) ---> Cluster 96
Closed inf-TRM: Gene Module in GRAM 15. RME1 (Module 14) ---> Cluster 37 16. MET4 (Module 19) ---> Cluster 25 17. SFP1 (Module 22) ---> Cluster 40 18. MET31 (Module 23) ---> Cluster 24 19. MSN4 (Module 25) ---> Cluster 26 20. IXR1 (Module 26) ---> Cluster 20 21. DIG1 (Module 27) ---> Cluster 9 22. CAD1_YAP1 (Module 28) ---> Cluster 67 23. STE12 (Module 29) ---> Cluster 43 24. PDR1 (Module 33) ---> Cluster 31 25. SWI4_SWI6_MBP1 (Module 39) ---> Cluster 102 26. NDD1_FKH2 (Module 40) ---> Cluster 60