List of closed inf-TRMs
|
1.
DOT6 |
11.
CRZ1 |
21.
YJL206C_MCM1 |
31.
SUM1_GCN4 |
Details:
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Module: 1 Regs: DOT6 #Support: 3 Similar_ratio: 1.0 ------------------------ 0.0368017 YPR032W polarized exocytosis by regulating SNARE function 0.0541316 YHR155W strong similarity to SNF1P-interacting protein SIP3P 0.0573352 YBR156C Mitotic spindle protein involved in chromosome segregation ------------------------------------------------------------------
Module: 2 Regs: RIM101_GTS1 #Support: 4 Similar_ratio: 0.75 ------------------------ 0.0254554 YAL067C suppressor of sulfoxyde ethionine resistance 0.0533893 YAL065C strong similarity to FLO1P and FLO9P - putative pseudogene 0.0567335 YAL064C-A "strong similarity to FLO1P, FLO5P - putative pseudogene" *0.324134 YAL068C strong similarity to subtelomeric encoded proteins ------------------------------------------------------------------
Module: 3 Regs: CHA4 #Support: 5 Similar_ratio: 0.6 ------------------------ 0.0400326 YPR140W similarity to human BTHS gene involved in Barth syndrome 0.0414743 YDR057W weak similarity to L.lactis mleR protein 0.0445302 YPR139C "weak similarity to nGAP,H. sapiens nGAP mRNA" *0.0997692 YGL121C hypothetical protein *0.126284 YDR056C hypothetical protein
Significant shared GO terms: Process terms ------------------------------------------------------------------
Module: 4 Regs: RTS2 #Support: 7 Similar_ratio: 0.67 ------------------------ 0.0397978 YGL005C weak similarity to Xenopus kinesin-related protein Eg5 0.0510597 YLR363C NAM7P interacting protein 0.0525886 YLR364W weak similarity to GRX2 Homo sapiens glutaredoxin 2 0.0538392 YJL162C weak similarity to dnaJ proteins *0.101557 YBR210W strong similarity to D.melanogaster cornichon protein *0.432242 YML045W YML045W *- YML045W-A itG(GCC)M
Significant shared GO terms: Component terms ------------------------------------------------------------------
Module: 5 Regs: UGA3 #Support: 6 Similar_ratio: 0.5 ------------------------ 0.0430903 YBR282W "ribosomal protein YmL27 precursor, mitochondrial" 0.0442995 YBR281C similarity to hypothetical protein YFR044c 0.0456288 YNL168C similarity to C.elegans ZK688.3 protein and E.coli hpcEp *0.0948297 YKR014C GTP-binding protein of the rab family *0.119828 YKL201C regulates the mannosylphosphorylation *0.124328 YNR068C similarity to BUL1P
Significant shared GO terms: Component terms ------------------------------------------------------------------
Module: 6 Regs: MATa1 #Support: 4 Similar_ratio: 0.75 ------------------------ 0.0503936 YNL003C member of the mitochondrial carrier (MCF) family 0.054636 YHR052W weak similarity to P.yoelii rhoptry protein 0.058828 YDL178W actin interacting protein 2 *0.198697 YGL230C hypothetical protein
Significant shared GO terms: Component terms ------------------------------------------------------------------
Module: 7 Regs: MIG1 #Support: 10 Similar_ratio: 0.5 ------------------------ 0.0392948 YLR417W defective in vacuolar protein sorting 0.0481231 YGL003C substrate-specific activator of APC-dependent proteolysis 0.0523266 YAL011W weak similarity to Mus musculus p53-associated cellular protein 0.0533757 YPR058W mitochondrial carrier protein (MCF) 0.0564294 YGL002W strong similarity to human gp25L2 protein *0.0958474 YMR066W hypothetical protein *0.134194 YLR415C questionable ORF *0.139254 YLR416C hypothetical protein *0.144763 YNR047W similarity to ser/thr protein kinases *0.224073 YBR121C glycine--tRNA ligase
Significant shared GO terms: Process terms, Component terms ------------------------------------------------------------------
Module: 8 Regs: RTG1 #Support: 4 Similar_ratio: 0.75 ------------------------ 0.0392291 YMR126C hypothetical protein 0.0441193 YKR098C ubiquitin C-terminal hydrolase 0.0504758 YKR099W transcription factor *0.102196 YMR125W large subunit of the nuclear cap-binding protein complex CBC ------------------------------------------------------------------
Module: 9 Regs: HAP5_HAP3_HAP2 #Support: 4 Similar_ratio: 1.0 ------------------------ 0.048107 YPL207W "similarity to hypthetical proteins from A. fulgidus, M. thermoautotrophicum and M. jannaschii" 0.0500839 YLR220W involved in calcium regulation 0.0533478 YLL027W mitochondrial protein required for normal iron metabolism 0.0587848 YER174C "member of the subfamily of yeast glutaredoxins (Grx3, GRX4, and Grx5)" ------------------------------------------------------------------
Module: 10 Regs: DAL82 #Support: 6 Similar_ratio: 0.5 ------------------------ 0.0374692 YBR002C "cis-prenyltransferase, a key enzyme in dolichol synthesis" 0.0540844 YGR007W choline phosphate cytidylyltransferase 0.0567824 YBR003W hexaprenyl pyrophosphate synthetase precursor *0.0970691 YOL075C similarity to A.gambiae ATP-binding-cassette protein *0.101285 YLR438W ornithine aminotransferase *0.113529 YLR437C hypothetical protein
Significant shared GO terms: Process terms ------------------------------------------------------------------
Module: 11 Regs: CRZ1 #Support: 6 Similar_ratio: 0.83 ------------------------ 0.048431 YDL155W "cyclin, G2/M-specific" 0.0526546 YGL142C required for Glycosyl Phosphatdyl Inositol synthesis 0.056876 YKL211C anthranilate synthase component II 0.0594173 YBL056W ser/thr protein phosphatase PP2C 0.0619673 YBL057C strong similarity to hypothetical S.pombe protein *0.0979616 YGL141W ubiquitin-protein ligase (E3)
Significant shared GO terms: Process terms, Function terms ------------------------------------------------------------------
Module: 12 Regs: GLN3 #Support: 4 Similar_ratio: 0.75 ------------------------ 0.0380048 YEL005C VAC8P binding protein of 31 kDa 0.0398004 YEL004W strong similarity to K.lactis golgi uridine diphosphate-N-acetylglucosamine transporter 0.0527541 YNR006W vacuolar protein sorting-associated protein *0.0964183 YOR102W questionable ORF
Significant shared GO terms: Function terms ------------------------------------------------------------------
Module: 13 Regs: HAL9 #Support: 6 Similar_ratio: 0.67 ------------------------ 0 YCR102W-A similarity to other hypothetical yeast proteins 0.0406988 YDR317W hypothetical protein 0.0491928 YOL084W similarity to A.thaliana hyp1 protein 0.0497231 YOL085C hypothetical protein *0.090388 YCR102C similarity to C.carbonum toxD gene *0.212762 YGR259C questionable ORF ------------------------------------------------------------------
Module: 14 Regs: RME1 #Support: 6 Similar_ratio: 0.5 ------------------------ 0.0381532 YKR062W "TFIIE subunit (transcription initiation factor), 43 KD" 0.0443308 YIL014W "alpha-1,3-mannosyltransferases responsible for adding the terminal mannose residues of O-linked oligosaccharides" 0.054607 YNL032W "similarity to YNL099c, YNL056w and YDR067c" *0.0878881 YLR066W signal peptidase subunit *0.108021 YLR065C weak similarity to hypothetical protein A. thaliana *0.085969 YLR369W mitochondrial heat shock protein 70
Significant shared GO terms: Process terms ------------------------------------------------------------------
Module: 15 Regs: INO4 #Support: 6 Similar_ratio: 0.5 ------------------------ 0.0418941 YDR129C "actin filament bundling protein, fimbrin" 0.0442501 YER026C CDP-diacylglycerol serine O-phosphatidyltransferase 0.0462525 YGR157W phosphatidylethanolamine N-methyltransferase *0.138249 YHR123W "sn-1,2-diacylglycerol ethanolamine- and cholinephosphotransferase" *0.205994 YDR050C triose-phosphate isomerase *0.333015 YMR084W strong similarity to GFA1P - putative pseudogene
Significant shared GO terms: Process terms, Function terms, Component terms ------------------------------------------------------------------
Module: 16 Regs: GCR1 #Support: 9 Similar_ratio: 0.67 ------------------------ 0 YBL107W-A questionable ORF - identified by SAGE 0 YER138W-A questionable ORF - identified by SAGE 0.041117 YGR215W strong similarity to hypothetical S. pombe protein 0.0417129 YKR027W strong similarity to CHS6P *0.115472 YNL203C weak similarity to B.subtilis CDP-diacylglycerol--serine O-phosphatidyltransferase *0.365298 YAL038W pyruvate kinase *- YER137C-A iYERCdelta20 *- YPR158W-A iYPR158W *- YPR158W-B iYPR158W ------------------------------------------------------------------
Module: 17 Regs: HIR2 #Support: 4 Similar_ratio: 0.75 ------------------------ 0.0312715 YGR107W questionable ORF 0.0330835 YPL060W strong similarity to MRS2P 0.0356829 YNL146W hypothetical protein *0.159407 YBR053C similarity to rat regucalcin ------------------------------------------------------------------
Module: 18 Regs: HAP3 #Support: 5 Similar_ratio: 0.8 ------------------------ 0.0349667 YBR217W component of the autophagic system 0.0428114 YBR216C strong similarity to hypothetical protein YGL060w 0.0599497 YJR082C hypothetical protein 0.0622491 YCR028C high affinity H+/pantothenate symporter *0.102476 YJL145W weak similarity to T.pacificus retinal-binding protein
Significant shared GO terms: Process terms ------------------------------------------------------------------
Module: 19 Regs: MET4 #Support: 5 Similar_ratio: 0.8 ------------------------ 0.0445609 YIR017C transcriptional activator of sulfur amino acid metabolism 0.0480258 YLR092W sulfate transporter 0.0503707 YIR018W involved in transcription activation 0.0588443 YFR035C hypothetical protein *0.325121 YGR060W C-4 sterol methyl oxidase
Significant shared GO terms: Process terms, Function terms ------------------------------------------------------------------
Module: 20 Regs: MET4_MET31 #Support: 3 Similar_ratio: 1.0 ------------------------ 0.0463008 YAL012W cystathionine gamma-lyase 0.0536063 YLR179C similarity to TFS1P 0.0624423 YLR180W S-adenosylmethionine synthetase 1
Significant shared GO terms: Process terms ------------------------------------------------------------------
Module: 21 Regs: YJL206C_MCM1 #Support: 6 Similar_ratio: 0.83 ------------------------ 0.0465809 YPL276W identical to a region of YOR388c 0.047562 YPL277C strong similarity to hypothetical protein YOR389w/putative pseudogene 0.0569001 YPL278C strong similarity to hypothetical protein YOR389w/putative pseudogene 0.0581733 YOR389W strong similarity to putative pseudogenes YPL277c and YPL278c 0.0605291 YPL275W identical to a region of YOR388c *0.136543 YOR388C strong similarity to H.polymorpha formate dehydrogenase
Significant shared GO terms: Process terms, Function terms ------------------------------------------------------------------
Module: 22 Regs: SFP1 #Support: 10 Similar_ratio: 0.5 ------------------------ 0 YPL183W-A strong similarity to mitochondrial and bacterial ribosomal L36 proteins 0.0477741 YPL184C weak similarity to PUB1P 0.0496238 YJL068C strong similarity to human esterase D 0.0562541 YGR250C weak similarity to human cleavage stimulation factor 64K chain 0.0563505 YPL086C subunit of elongator/RNAPII holoenzyme with histone acetylase activity *0.0910614 YOR151C "DNA-directed RNA polymerase II, 140 kDa chain" *0.100932 YJL067W questionable ORF *0.128677 YPL085W multidomain vesicle coat protein *0.155404 YOR032C weak similarity to DNA-binding proteins *0.143356 YDR039C P-type ATPase involved in Na+ efflux ------------------------------------------------------------------
Module: 23 Regs: MET31 #Support: 6 Similar_ratio: 0.83 ------------------------ 0.0445544 YEL072W hypothetical protein 0.0498019 YNL025C "DNA-directed RNA polymerase II holoenzyme,and Kornberg's mediator (SRB) subcomplex subunit, cyclin C homolog" 0.0526354 YGL184C strong similarity to Emericella nidulans and similarity to other cystathionine beta-lyase and CYS3P 0.0553112 YPR167C 3'-phosphoadenylylsulfate reductase 0.0617706 YPR168W negative transcription regulator from artifical reporters *0.13178 YJL060W similarity to kynurenine aminotransferase and glutamine-phenylpyruvate transaminase
Significant shared GO terms: Process terms, Function terms, Component terms ------------------------------------------------------------------
Module: 24 Regs: RGM1_GAT3_YAP5 #Support: 3 Similar_ratio: 1.0 ------------------------ 0.0346061 YJR161C strong similarity to subtelomeric encoded proteins 0.052405 YFL062W strong similarity to subtelomeric encoded proteins 0.0542176 YHL048W strong similarity to subtelomeric encoded proteins
Significant shared GO terms: Component terms ------------------------------------------------------------------
Module: 25 Regs: MSN4 #Support: 6 Similar_ratio: 0.5 ------------------------ 0.044626 YPL150W similarity to ser/thr protein kinases 0.0481503 YPL151C strong similarity to A.thaliana PRL1 and PRL2 proteins 0.0585897 YDR180W involved in sister chromatid cohesion *0.149714 YBR074W weak similarity to aminopeptidase Y *0.162049 YIL176C strong similarity to members of the SRP1P/TIP1P family *0.218339 YER103W "heat shock protein of HSP70 family, cytosolic"
Significant shared GO terms: Function terms ------------------------------------------------------------------
Module: 26 Regs: IXR1 #Support: 7 Similar_ratio: 0.57 ------------------------ 0.0508004 YDL247W strong similarity to sugar transport proteins 0.0541516 YGR100W MAC1P interacting protein 0.0565378 YJR160C strong similarity to MAL31P 0.0609645 YKR075C weak similarity to negative regulator REG1P *0.0923748 YLR287C weak similarity to S.pombe hypothetical protein SPAC22E12 *0.168587 YLL041C succinate dehydrogenase iron-sulfur protein subunit *0.183022 YOR253W "weak similarity to 'separation anxiety protein-like';,A. thaliana"
Significant shared GO terms: Process terms, Function terms, Component terms ------------------------------------------------------------------
Module: 27 Regs: DIG1 #Support: 9 Similar_ratio: 0.57 ------------------------ 0 YER048W-A similarity to D. melanogaster protein 0.0523429 YPR060C chorismate mutase 0.0571486 YBL016W mitogen-activated protein kinase (MAP kinase) 0.0602146 YBL017C vacuolar protein sorting/targeting protein *0.117859 YMR052W involved in pheromone-mediated cell cycle arrest *0.207491 YER138C YER138C *0.286882 YER160C YER160C *- YER159C-A iYERCdelta24 *- YLR035C-A iYLR035C-A-0
Significant shared GO terms: Component terms ------------------------------------------------------------------
Module: 28 Regs: CAD1_YAP1 #Support: 8 Similar_ratio: 0.5 ------------------------ 0.0430488 YKR052C RNA splicing protein and member of the mitochondrial carrier family (MCF) 0.0539046 YOL119C similarity to monocarboxylate transporter proteins 0.0554706 YPR048W similarity to M.domestica NADPH--ferrihemoprotein reductase and mammalian nitric-oxide synthases 0.0557747 YLL060C glutathione S-transferase *0.082401 YLR108C strong similarity to YDR132c *0.109384 YMR038C copper chaperone for superoxide dismutase SOD1P *0.157397 YKR071C weak similarity to C.elegans hypothetical protein *0.337107 YLR109W Alkyl hydroperoxide reductase
Significant shared GO terms: Process terms, Function terms ------------------------------------------------------------------
Module: 29 Regs: STE12 #Support: 12 Similar_ratio: 0.56 ------------------------ 0 YPR002C-A questionable ORF - identified by SAGE 0.0435399 YHR083W hypothetical protein 0.0523891 YHR082C ser/thr protein kinase 0.0579203 YOR092W involved in cell wall biogenesis and architecture 0.0632054 YGL067W "NADH pyrophosphatase I of the Nudix family of hydrolases, has a peroxisomal targeting signal" *0.0946886 YPL156C weak similarity to YDL010w *0.100417 YGL069C questionable ORF *0.0998228 YCR017C putative sensor/transporter protein *0.107037 YGL062W pyruvate carboxylase 1 *- YOR343C-B iYORWdelta22 *- YGR038C-B YGRCTy1-2B *- YOR343C-A iYORWdelta22
Significant shared GO terms: Function terms ------------------------------------------------------------------
Module: 30 Regs: FKH1_NDD1_FKH2 #Support: 5 Similar_ratio: 0.6 ------------------------ 0.0372971 YDR325W Yeast Condensin G 0.043815 YGR092W ser/thr protein kinase related to DBF20P 0.058179 YDR324C weak similarity to beta transducin from S. pombe and other WD-40 repeat containing proteins *0.117175 YBR138C High-Dosage Reductional segregation defective *0.134822 YBR139W strong similarity to carboxypeptidase
Significant shared GO terms: Process terms ------------------------------------------------------------------
Module: 31 Regs: SUM1_GCN4 #Support: 5 Similar_ratio: 0.6 ------------------------ 0.0156773 YJR026W YJR026W 0.0209692 YJR028W YJR028W 0.034159 YJR029W YJR029W *0.116242 YJR027W YJR027W *0.295477 YJR025C 3-hydroxyanthranilic acid dioxygenase
Significant shared GO terms: Process terms, Function terms, Component terms ------------------------------------------------------------------
Module: 32 Regs: GAT3_SWI5_YAP5 #Support: 3 Similar_ratio: 1.0 ------------------------ 0.035545 YFL064C strong similarity to subtelomeric encoded proteins 0.0365705 YFL065C strong similarity to subtelomeric encoded proteins 0.0615544 YFL063W strong similarity to subtelomeric encoded proteins ------------------------------------------------------------------
Module: 33 Regs: PDR1 #Support: 11 Similar_ratio: 0.5 ------------------------ 0.0372736 YHR197W weak similarity to PIR:T22172 hypothetical protein F44E5.2 C. elegans 0.0433053 YDL148C nuclear and nucleolar protein with possible role in ribosome biogenesis 0.0537485 YOR307C secretory pathway protein 0.0607377 YOL080C strong similarity to X.laevis XPMC2 protein and YGR276c 0.0634215 YDR368W strong similarity to members of the aldo/keto reductase family *0.111081 YOL078W similarity to stress activated MAP kinase interacting protein S. pombe *0.117012 YMR240C U2 snRNP protein *0.121715 YDL147W subunit of the regulatory particle of the proteasome *0.132389 YMR241W yeast suppressor gene of HM (mitochondrial histone) mutant (ABF2) *0.298094 YDR366C similarity to YOL106w and YER181c *- YOL077W-A subunit K of the dimeric form of mitochondrial F1F0-ATP synthase
Significant shared GO terms: Process terms, Component terms ------------------------------------------------------------------
Module: 34 Regs: PDR1_FHL1_RAP1 #Support: 4 Similar_ratio: 0.75 ------------------------ 0.0476856 YDR471W 60S large subunit ribosomal protein 0.0550738 YER074W 40s small subunit ribosomal protein S24.e 0.0551023 YEL054C 60S large subunit ribosomal protein L12.e *0.252031 YDR470C similarity to chromosome segregation protein CSE1P
Significant shared GO terms: Process terms, Function terms, Component terms ------------------------------------------------------------------
Module: 35 Regs: ACE2_MBP1 #Support: 3 Similar_ratio: 1.0 ------------------------ 0.044161 YHR195W part of nucleus-vacuole junctions 0.0467305 YKL084W strong similarity to S.pombe hypothetical protein SPAC29B12 0.0538867 YGR125W similarity to S.pombe hypothetical protein SPAC24H6.11c ------------------------------------------------------------------
Module: 36 Regs: NRG1_CIN5_YAP6 #Support: 6 Similar_ratio: 1.0 ------------------------ 0.045882 YIL170W strong similarity to sugar transport proteins 0.04635 YIL171W strong similarity to sugar transport proteins 0.0544495 YOL157C strong similarity to alpha-glucosidases 0.0545948 YIL172C identical to FSP2P and similarity to other alpha-glucosidases 0.0588876 YOR049C "similarity to YER185w, RTA1P" 0.0621131 YOL156W low affinity glucose transport protein
Significant shared GO terms: Function terms, Component terms ------------------------------------------------------------------
Module: 37 Regs: SWI6 #Support: 15 Similar_ratio: 0.53 ------------------------ 0.0514206 YDR279W hypothetical protein 0.0528937 YJL093C outward-rectifier potassium channel 0.0549732 YJL092W ATP-dependent DNA helicase 0.0598025 YKL214C weak similarity to mouse transcriptional coactivator ALY 0.0601334 YDL141W biotin holocarboxylase synthetase 0.0616827 YER128W hypothetical protein 0.0617819 YOR106W syntaxin (t-SNARE) 0.0625327 YER140W similarity to PIR:T39406 hypothetical protein S. pombe *0.0815584 YML082W similarity to N.crassa O-succinylhomoserine (thiol)-lyase *0.0803226 YKL161C strong similarity to ser/thr-specific protein kinase SLT2P *0.0897657 YDL142C cardiolipin synthase *0.0840722 YER139C similarity to hypothetical protein YDR066c *0.0855871 YFL055W amino acid permease *0.118426 YML083C hypothetical protein *0.124577 YGL239C questionable ORF
Significant shared GO terms: Process terms ------------------------------------------------------------------
Module: 38 Regs: SWI6_FKH2_MBP1 #Support: 5 Similar_ratio: 0.8 ------------------------ 0.0344927 YDR113C cell cycle regulator 0.0418274 YDL018C weak similarity to DEP1P 0.0510262 YDL017W protein kinase 0.0561851 YMR076C precocious dissociation of sister chromatids *0.0938962 YDR115W similarity to bacterial ribosomal L34 proteins
Significant shared GO terms: Process terms, Component terms ------------------------------------------------------------------
Module: 39 Regs: SWI6_MBP1_SWI4 #Support: 6 Similar_ratio: 0.67 ------------------------ 0.0504243 YJL187C ser/tyr dual-specifity protein kinase 0.0505856 YMR179W required for normal transcription at a number of loci 0.0534011 YHR150W weak similarity to YDR479c 0.059473 YHR149C similarity to hypothetical protein YGR221c *0.0900761 YML027W homoeodomain protein *0.152056 YJL186W putative mannosyltransferase
Significant shared GO terms: Process terms, Component terms ------------------------------------------------------------------
Module: 40 Regs: NDD1_FKH2 #Support: 5 Similar_ratio: 0.6 ------------------------ 0.039114 YBR037C involved in stabilization of COX1P and COX2P 0.0595779 YML050W weak similarity to potato sucrose cleavage protein 0.06322 YBR038W chitin synthase II *0.174458 YBR092C constitutive acid phosphatase precursor *0.322721 YDR033W membrane protein related to HSP30P ------------------------------------------------------------------