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Knowledge Discovery and Data Management in Biomedical Science (KDDMBS)
Hanoi, Vietnam, May 18th, 2005
In conjunction with PAKDD-05 (http://www.jaist.ac.jp/PAKDD-05)
Along with the development of high-throughput technologies in
molecular experiments, biology is gradually shifting its research
approach towards comprehensive and data-driven methods. Establishing a
methodology for knowledge discovery and management of large amounts of
heterogeneous data has therefore become a main priority in
bioinformatics. To accomplish this objective, both practical
applications and theoretical research will be essential.
Organized in conjunction with PAKDD-05, the goal of this workshop is
to attract various researchers from both computer science and
bioinformatics for sharing and exchanging their awareness of current
research issues, technologies, and ideas. Papers are welcome from
topics related to various data- and knowledge-based approaches in
bioinformatics, such as (but not limited to) the following:
[computational keywords]
- Database integration and management
- Knowledge discovery and data mining
- Prediction by machine learning
- Information retrieval and extraction
- Linguistic and semantic resources including dictionary and ontology
[biomedical keywords]
- Molecular interaction analysis
- Analysis and simulation on molecular network and pathway
- Extraction of functional information from biomedical literature
- Computer-aided annotation
- Chemoinformatics
- Drug discovery
- Diagnosis and healthcare
Submission Guideline:
All papers should not exceed 12 single-spaced pages on A4 paper size
(or 5000 words), using at least 1 inch margins and 12-point
font. When submitting, please send an electronic version (.pdf) of
your paper to the email address below.
kddmbs-submit@jaist.ac.jp
Publication:
All the accepted *and* presented papers will be included in the
proceedings available on-site during the workshop. The proceedings
will be published by Vietnamese Academy of Science and Technology
(VAST). To be included in the proceedings, at least one of the
authors must confirm his/her attendance to the workshop and present
the paper. Authors of accepted papers must complete a confirmation
form and submit it with the camera-ready version of the paper.
Important Dates:
Submission deadline was extended. Note that this is the firm deadline.
No more extension is allowed.
Paper Submissions Due: March 14, 2005 March 24, 2005
Notification Date: April 4, 2005 April 7, 2005 April 9, 2005
Camera Ready Due: April 18, 2005 April 21, 2005
Invited Speakers:
Susumu Goto, Bioinformatics Center, Institute for Chemical Research, Kyoto University
Le Tran Binh, Institute of Biotechnology, Vietnamese Academy of Science and Technology
Accepted Papers:
Ashkan Sami and Makoto Takahashi: FAF: Finding All Features Relating to Different Gene Sequences
Nguyen Thanh Tung, Do Phuc, Tran Linh Thuoc: Predicting Protein Secondary Structure based on SCOP folds using HMM and Decision tree (cancelled)
Do Phuc, Hoang Kiem: A M-Tree Based Similarity Search Model In DNA Sequence Databases (cancelled)
Geuk Lee, Seoksoo Kim: A Management Scheme for Family Medical History on the Tele-Medicine System (cancelled)
Tho Hoan Pham, Tu Bao Ho, Kenji Satou, Jose C. Clemente: Rule Evaluation Heuristics for Knowledge Discovery
Shigeru Takasaki, Akihiko Konagaya: Comparative Analyses for Selecting Effective siRNA Target Sequences
Aki Hasegawa, Shouji Tatsumoto, Akihiko Konagaya: Empirical Study on Hierarchical Clustering Algorithm on a Shared Memory UNIX Computer System
Tatsuya Kushida, Satoko Yamamoto, Yuki Yamagata, Takao Asanuma, Emi Hattori, Toshihisa Takagi, Ken Ichiro Fukuda: Research on Biological Pathways Peculiar to Woody Perennial Plants Using a Pathway database: P-INOH
Tu Bao Ho, Saori Kawasaki, Si Quang Le, Canh Hao Nguyen, Katsuhiko Takabayashi, Hideto Yokoi: Temporal Relations in Mining Hepatitis Data
Workshop Program:
Advanced Program (Tentative)
Wednesday, May 18th, 2005
09:00-09:05 Opening Address
Session 1
09:05-09:35 FAF: Finding All Features Relating to Different Gene Sequences
09:35-10:05 Comparative analyses for selecting effective siRNA target sequences
10:05-10:35 Rule Evaluation Heuristics for Knowledge Discovery
10:35-10:45 Short Break
10:45-11:45 Invited Talk Network Representation and Analysis in Bioinformatics Susumu Goto
11:45-13:15 Lunch Break
13:15-14:15 Invited Talk Current Status of Molecular Biotechnology Research in Vietnam Le Tran Binh
14:15-14:25 Short Break
Session 2
14:25-14:55 Empirical Study on Hierarchical Clustering Algorithm on a Shared Memory UNIX Computer System
14:55-15:25 Research on Biological Pathways Peculiar to Woody Perennial Plants Using a Pathway database: P-INOH
15:25-15:55 Temporal Relations in Mining Hepatitis Data
15:55-16:00 Closing Address
regular talk: 30 min. including 5 min. Q&A
invited talk: 60 min. including 5 min. Q&A
Workshop Venue:
The workshop will be held at the same location as PAKDD-05. Please
visit the PAKDD-05 web site.
Registration:
The registration of the workshop is included in the registration of
PAKDD-05. Please visit the PAKDD-05 web site.
Accommodation:
For the information about accommodation, please visit the PAKDD-05
web site.
Organization:
Workshop and Program committee chairs
Kenji Satou, JAIST
Ho Tu Bao, JAIST
Program committee
Toshihisa Takagi, University of Tokyo
Susumu Goto, Kyoto University
Akihiko Konagaya, RIKEN
Taishin Kin, University of Tokyo
Satoru Miyazaki, Tokyo University of Science
Jinyan Li, Institute for Infocomm Research
Doheon Lee, KAIST
Do Phuc, Vietnam National University at HCM city
Thu Hoang, Rene Descartes University
Questions:
For any inquiries about the workshop, please send emails to the
following address.
kddmbs-organizers@jaist.ac.jp
Support:
This workshop is supported by JST BIRD.
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