List of publications :


Year : 2020 2019 2018 2017 2016 2015 2014 2013 2012 2011 -2010

  • 2020

    • K. Yamada, T. Yamaguchi, R. Ohashi, S. Ohki, K. Deguchi, K. Hashi, A. Goto, T. Shimizu
      Field-stepwise-swept QCPMG solid-state 115In NMR of indium oxide
      Solid State Nuclear Magnetic Resonance, in press, 2020

    • K. Yamada, Y. Yamaguchi, Y. Uekusa, K. Aoki, I. Shimada, T. Yamaguchi, K. Kato
      Solid-state 17O NMR analysis of synthetically 17O-enriched D-glucosamine
      Chem. Phys. Lett., 749, 137455, 2020

    • T. Yamaguchi
      Delineating the dynamic conformations of oligosaccharides by combining molecular simulation and NMR spectroscopy
      Trends Glycosci. Glycotechnol. 32, E93–E98 (J79-J84, Japanese edition), 2020

    • 加藤晃一, 山口拓実
      糖鎖生物学(北島 健, 佐藤ちひろ, 門松健治, 加藤晃一編), 名古屋大学出版会, pp.109-110, 2020

  • 2019

    • T. Suzuki, S. Yanaka, T. Watanabe, G. Yan, T. Satoh, H. Yagi, T. Yamaguchi, K. Kato
      Remodeling of the oligosaccharide conformational space in the prebound state to improve lectin-binding affinity
      Biochemistry, 34, 3180–3185, 2020

    • S. Yanaka, R. Yogo, R. Inoue, M. Sugiyama, S. G. Itoh, H. Okumura, Y. Miyanoiri, H. Yagi, T. Satoh, T. Yamaguchi, K. Kato
      Dynamic views of the Fc region of immunoglobulin G provided by experimental and computational observations
      Antibodies, 8, 39, 2019

    • 山口拓実
      日本核磁気共鳴学会機関誌, 10, 42-47, 2019

    • 加藤晃一, 山口拓実, 矢木真穂
      糖質分析(日本分析化学会編), 丸善出版, pp.246-252, 2019

    • 矢木宏和, 鈴木達哉, 谷中冴子, 山口拓実, 加藤晃一
      医学のあゆみ, 269, 761-767, 2019

  • 2018

    • H. Yagi, G. Yan, T. Suzuki, S. Tsuge, T. Yamaguchi, K. Kato
      Lewis X-carrying neoglycolipids evoke selective apoptosis in neural stem cells
      Neurochem. Res. 43, 212-218, 2018

    • T. Yamaguchi and K. Kato
      Molecular dynamics of gangliosides
      Methods Mol. Biol. 1804, 411-417, 2018

    • 山口拓実, 渡邉東紀男, 矢木宏和, 加藤晃一
      J. Comput. Chem. Jpn. 17, 1-7, 2018

    • K. Kurihara, M. Matsuoc, T. Yamaguchi, S. Sato
      Synthetic approach to biomolecular science by cyborg supramolecular chemistry
      BBA - General Subjects, 1862, 358-364, 2018

  • 2017

    • Y. Sakae, T. Satoh, H. Yagi, S. Yanaka, T. Yamaguchi, Y. Isoda, S. Iida, Y. Okamoto, K. Kato
      Conformational effects of N-glycan core fucosylation of immunoglobulin G Fc region on its interaction with Fcγ receptor IIIa
      Sci. Rep. 7, 13780, 2017

    • G. Yan, T. Yamaguchi, T. Suzuki, S. Yanaka, S. Sato, M. Fujita, K. Kato
      Hyper-assembly of self-assembled glycoclusters mediated by specific carbohydrate–carbohydrate interactions
      Chem. Asian J. 12, 968-972, 2017

    • T. Suzuki, M. Kajino,S. Yanaka,T. Zhu,H. Yagi,T. Satoh,T. Yamaguchi,K. Kato
      Conformational analysis of a high-mannose-type oligosaccharide displaying glucosyl determinant recognised by molecular chaperones using NMR-validated molecular dynamics simulation
      ChemBioChem, 18, 396-410, 2017

    • K. Kato, H. Yagi, T. Yamaguchi
      NMR characterization of the dynamic conformations of oligosaccharides
      In: Modern Magnetic Resonance (G. Webb eds), Springer, 2017,

    • M. Yagi-Utsumi, T. Yamaguchi, Y. Uekusa, K. Kato
      NMR characterization of the conformations, dynamics, and interactions of glycosphingolipids
      In: NMR in Glycoscience and Glycotechnology (K. Kato and T. Peters eds), RSC Publishing, pp161-178, 2017

  • 2016

    • T. Satoh, T. Toshimori, G. Yan, T. Yamaguchi, K. Kato
      Structural basis for two-step glucose trimming by glucosidase II involved in ER glycoprotein quality control
      Sci. Rep. 6, 20575, 2016

    • S. Seetaha, M. Yagi-Utsumi, T. Yamaguchi, K. Ishii, S. Hannongbua, K. Choowongkomon, K. Kato
      Application of site-specific spin labeling for NMR detecting inhibitor-induced conformational change of HIV-1 reverse transcriptase
      ChemMedChem, 11, 363-366, 2016

    • M. Yagi-Utsumi, T. Yamaguchi, R. Kitahara, K. Kato
      NMR explorations of biomolecular systems with rapid conformational exchanges
      In: Molecular Science of Fluctuations toward Biological Functions (M. Terazima, M. Kataoka, R. Ueoka, and Y. Okamoto eds), Springer, pp87-103, 2016

  • 2015

    • T. Zhu, T. Yamaguchi, T. Satoh, K. Kato
      A hybrid strategy for the preparation of 13C-labeled high-mannose-type oligosaccharides with terminal glucosylation for NMR study
      Chem. Lett. 44, 1744-1746, 2015

    • R. Thammaporn, M. Yagi-Utsumi, T. Yamaguchi, P. Boonsri, P Saparpakorn, K. Choowongkomon, S. Techasakul, K. Kato, S. Hannongbua
      NMR characterization of HIV-1 reverse transcriptase binding to various non-nucleoside reverse transcriptase inhibitors with different activities
      Sci. Rep. 5, 15806, 2015

    • S. Sato, Y. Yoshimasa, D. Fujita, M. Yagi-Utsumi, T. Yamaguchi, K. Kato, M. Fujita
      A self-assembled spherical complex displaying a gangliosidic glycan cluster capable of interacting with amyloidogenic proteins
      Angew. Chem. Int. Ed. 54, 8435-8439, 2015

    • H. Yagi, Y. Zhang, M. Yagi-Utsumi, T. Yamaguchi, S. Iida, Y. Yamaguchi, K. Kato
      Backbone 1H, 13C, and 15N resonance assignments of the Fc fragment of human immunoglobulin G glycoprotein
      Biomol. NMR Assign. 9, 257-260, 2015

    • H. Yagi, M. Nakamura, J. Yokoyama, Y. Zhang, T. Yamaguchi, S. Kondo, J. Kobayashi, T. Kato, E. Y. Park, S. Nakazawa, N. Hashii, N. Kawasaki, K. Kato
      Stable isotope labeling of glycoprotein expressed in silkworms using immunoglobulin G as a test molecule
      J. Biomol. NMR, 62, 157-167, 2015

    • H. Yagi, N. Fukuzawa, Y. Tasaka, K. Matsuo, Y. Zhang, T. Yamaguchi, S. Kondo, S. Nakazawa, N. Hashii, N. Kawasaki, T. Matsumura, K. Kato
      NMR-based structural validation of therapeutic antibody produced in Nicotiana benthamiana
      Plant Cell Rep. 34, 959-968, 2015

    • S. Sato, R. Takeuchi, M. Yagi-Utsumi, T. Yamaguchi, Y. Yamaguchi, K. Kato, M. Fujita
      A self-assembled, π-stacked complex as a finely-tunable magnetic aligner for biomolecular NMR applications
      Chem. Commun. 51, 2540-2543, 2015

    • Y. Zhang, T. Yamaguchi, T. Satoh, M. Yagi-Utsumi, Y. Kamiya, Y. Sakae, Y. Okamoto, K. Kato
      Conformational dynamics of oligosaccharides characterized by paramagnetism-assisted NMR spectroscopy in conjunction with molecular dynamics simulation
      Adv. Exp. Med. Biol. 842, 217, 2015

    • K. Kato and T. Yamaguchi
      Paramagnetic NMR probes for characterization of the dynamic conformations and interactions of oligosaccharides
      Glycoconj. J. 32, 505, 2015

    • T. Satoh, T. Yamaguchi, K. Kato
      Emerging structural insights into glycoprotein quality control coupled with N-glycan processing in the endoplasmic reticulum
      Molecules, 20, 2475, 2015

    • 山口拓実, 加藤晃一
      生物物理, 55, 81-83, 2015

    • 山口拓実, 加藤晃一
      糖鎖の新機能開発・応用ハンドブック, エヌ・ティー・エス, pp.265-271, 2015

    • T. Yamaguchi and K. Kato
      Paramagnetism-assisted nuclear magnetic resonance analysis of dynamic conformations and interactions of oligosaccharides
      Glycoscience: Biology and Medicine, Springer, Vol.1, pp.137-145, 2015

  • 2014

    • T. Yamaguchi, Y. Sakae, Y. Zhang, S. Yamamoto, Y. Okamoto, K. Kato
      Exploration of conformational spaces of high-mannose-type oligosaccharides by an NMR-validated simulation
      Angew. Chem. Int. Ed. 53, 10941-10944, 2014

    • T. Doi, M. Yoshida, K. Ohsawa, K. Shin-ya, M. Takagi, Y. Uekusa, T. Yamaguchi, K. Kato, T. Hirokawa, T. Natsume
      Total Synthesis and Characterization of Thielocin B1 as a Protein–Protein Interaction Inhibitor of PAC3 Homodimer
      Chem. Sci. 5, 1860-1868, 2014

    • T. Satoh, K. Suzuki, T. Yamaguchi, K. Kato
      Structural basis for disparate sugar-binding specificities in the homologous cargo receptors ERGIC-53 and VIP36
      PLoS ONE, 9, e87963, 2014

    • M. Sugiyama, H. Yagi, T. Yamaguchi, K. Kumoi, M. Hirai, Y. Oba, N. Sato, L. Porcar, A. Martel, K. Kato
      Conformational characterization of a protein complex involving intrinsically disordered protein by small-angle neutron scattering using the inverse contrast matching method: a case study of interaction between α-synuclein and PbaB tetramer as a model chaperone
      J. Appl. Crystallography , 47, 430-435, 2014

    • Y. Yamaguchi, T. Yamaguchi, K. Kato
      Structural analysis of oligosaccharides and glycoconjugates using NMR
      In: Glycobiology of the Nervous System, Advances in Neurobiology (R.K. Yu and C.-L. Schengrund eds), Springer, pp.165-183, 2014

  • 2013

    • T. Yamaguchi, Y. Kamiya, Y.-M. Choo, S. Yamamoto, K. Kato
      Terminal spin labeling of a high-mannose-type oligosaccharide for quantitative NMR analysis of its dynamic conformation
      Chem. Lett. 42, 544-546, 2013

    • Y. Kamiya, K. Yanagi, T. Kitajima, T. Yamaguchi, Y. Chiba, K. Kato
      Application of metabolic 13C labeling in conjunction with high-field nuclear magnetic resonance spectroscopy for comparative conformational analysis of high mannose-type oligosaccharides
      Biomolecules, 3, 108-123, 2013

    • T. Yamaguchi, T. Uno, Y. Uekusa, M. Yagi-Utsumi, K. Kato
      Ganglioside-embedding small bicelles for probing membrane-landing processes of intrinsically disordered proteins
      Chem. Commun. 49, 1235-1237, 2013

    • Y. Zhang, T. Yamaguchi, K. Kato
      New NMR tools for characterizing the dynamic conformations and interactions of oligosaccharides
      Chem. Lett. 42, 1455-1462, 2013

  • 2012

    • Y. Zhang, S. Yamamoto, T. Yamaguchi, K. Kato
      Application of paramagnetic NMR-validated molecular dynamics simulation to the analysis of a conformational ensemble of a branched oligosaccharide
      Molecules, 17, 6658-6671, 2012

    • S. Yamamoto, Y. Zhang, T. Yamaguchi, T. Kameda, K. Kato
      Lanthanide-assisted NMR evaluation of a dynamic ensemble of oligosaccharide conformations
      Chem. Commun. 48, 4752-4754, 2012

  • 2011

    • S. Yamamoto, T. Yamaguchi, M. Erdélyi, C. Griesinger, K. Kato
      Paramagnetic lanthanide tagging for NMR conformational analyses of N-linked oligosaccharides
      Chem. Euro. J. 17, 9280–9282, 2011

  • -2010

    • M. Jang, T. Yamaguchi, K. Ohara, M. Kawano, M. Fujita
      Fluorous pores in coordination networks
      Chem. Asian J. 4, 1524–1526, 2009

    • Y. Nishioka, T. Yamaguchi, M. Kawano, M. Fujita Asymmetric [2+2] olefin cross photoaddition in a self-assembled host with remote chiral auxiliaries
      J. Am. Chem. Soc. 130, 8160–8161, 2008

    • T. Yamaguchi and M. Fujita
      Highly selective photo-mediated 1,4-radical addition to o-quinones controlled by a self-assembled cage
      Angew. Chem. Int. Ed. 47, 2067–2069, 2008

    • Y. Nishioka, T. Yamaguchi, M. Yoshizawa, M. Fujita
      Unusual [2+4] and [2+2] cycloadditions of arenes in the confined cavity of self-assembled cages
      J. Am. Chem. Soc. 129, 7000–7001, 2007

    • T. Yamaguchi, S. Tashiro, M. Tominaga, M. Kawano, T. Ozeki, M. Fujita
      Self-assembly and host-guest chemistry of a 3.5-nm coordination nanotube
      Chem. Asian J. 2, 468–476, 2007

    • T. Yamaguchi, S. Tashiro, M. Tominaga, M. Kawano, T. Ozeki, M. Fujita
      A 3.5-nm coordination nanotube
      J. Am. Chem. Soc. 126, 10818–10819, 2004