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Job Submission

The PC cluster is managed by the scheduler.

Please refer to the parallel server user manual for basic submitting jobs.

Making a job script

To execute a compiled executable file as a batch job, you need a job script to submit to the job scheduler.

Job Script

Please refer to following link．


After logon to pcc, sample script files can be found in the path below. Please copy it to your own directory before using．

pcc: /work/Samples

Job submission

1. Submit the job script to the scheduler as below.

% qsub -q <Queue> <Script>

 

2. Job submission (with mail notification)
Notification of the starting / ending the job can be requested as below,

% qsub -q <Queue> -M <mail address> -m be <Script>

   -M <contact email>
   -m be    # b -> begin(Job starting) , e -> end(Job ending)

 

3. Job deletion
Only the owner of the job can delete his already submitted jobs

% qdel <Job id>

 

 

Queue classes

Single Node Job：

Queue Node Num Chunk Num Core Num Wall time Concurrent Job num Concurrent Job num per user Priority
TINY 1node 1~4 ~32core 30min 1 1 1
SINGLE 1node 1~4 ~32core 1week 90job 16job 2
LONG 1node 1~4 ~32core 3week 12job 3job 2

GPU：

Queue Node Num GPU Num GPU Wall time Concurrent Job Num Concurrent Job num per user Priority
GPU-1 0.5node 1 Tesla P100 3day 16job 3job 1
GPU-S 1node 1-2 Tesla P100 2day 16job 1job 1
GPU-L 2-8node 3-16 Tesla P100 1day 2job 1job 2

Materials Studio ：

Queue Node Num Chunk Num Core Num Wall time Concurrent Job Num Concurrent Job Num/1User Priority
MatStudio 0.25node 1 ~8core 1week 20job 20job 1
MS_Dmol3 0.25node 1 ~8core 1week 40job 20job 1
MS_castep 0.25node 1 ~8core 1week 20job 20job 1
MS_Forcite 1node 1-4 ~32core 1week 1job 1job 1
MS_Compass 1node 1-4 ~32core 1week 1job 1job 1
MS_Amorphous 1node 1-4 ~32core 1week 1job 1job 1
MS_Dftbplus 1node 1-4 ~32core 1week 1job 1job 1
  • MatStudioキューのみMaterials Studio Gatewayユーザ専用キューとなります．
  • その他のキューに投入されたジョブは，各ライセンスが利用可能になるまで実行を待機します.

Multi Node：

Queue Node Num Chunk Num Core  Num Walltime Concurrent Job Num Concurrent Job Num/user priority
SMALL 2node 5~8 ~64core 3day 16job 4job 2
MEDIUM 3-8node 9~32 ~256core 12hour 4job 2job 2
LARGE 9-16node 33~64 ~512core 12hour 2job 1job 3

Additional Queue：

Queue Node Num Chunk Num Core Num Walltime Concurrent Job Num Concurrent Job Num /user Priority
LONG-L ～node - - (申請ベース) - - -